Programme at a glance

Time slots
Arrival
16/04/2023
HT1
17/04/2023
HT2
18/04/2023
HT3
19/04/2023
HT4 + HT3
20/04/2023
8:30 -
9:30
L1: Crystallization
T. Bergfors
L1: Fundamentals
E. Lowe
L1: Introduction to PDB
D. Armstrong
HT4 L1: Allosteric
pathways

Z. Štefanić
9:30 -
9:45
SP1: NT8
by Formulatrix
LSBLSBLSB
9:45 -
10:45
L2: Techniques
A. Abuhammad
L2: Processing
E. Lowe
T1: Basic use of PDBe
D. Armstrong
HT4 T1: Exploring
Z. Štefanić
B. Gomaz
10:45 -
11:15
10:45-11:00
Coffee break
Coffee breakCoffee breakCoffee break
11:15 -
12:00
11:00-12:00
D1: LCP Crystallization
M. Caffrey
T1: Processing
E. Lowe
L2: PDBe-KB
D. Armstrong


HT3 T5: GOLD
R. Chikhale
12:00 -
12:45
L3: Screening &
Optimization

T. Bergfors
L3: CCP4 Cloud
E. Krissinel
T2: Using PDBe-KB
D. Armstrong
12:45 -
14:30
Lunch breakLunch breakLunch breakLunch break
14:30 -
15:30
A1 S2: Bring your sampleT2+T3
E. Krissinel
M. Fando
L3: AlphaFold DB
D. Armstrong
HT2 L5: Validation
E. Krissinel
15:30 -
15:45



Registration

LSBLSBLSBLSB
15:45 -
16:30
L4: Cryo-cooling
E. Garman
L4: Refinement
R. Nicholls
L4: Programmatic
access

D. Armstrong
Closing ceremony
16:30 -
17:15
L5: Radiation
damage

E. Garman
T4: Coot
R. Nicholls
L5: CSD
Discovery intro

R. Chikhale
17:15 -
17:45
Coffee breakCoffee breakCoffee break
17:45 -
18:30
Opening ceremony
T2: Cryocooling
E. Garman
T5: Automatic
model building

M. Fando
T3: CSD-CrossMiner
R. Chikhale
18:30 -
19:15
A1 S1
Bring your sample

A1 S3
Bring your sample

T4: CSD+PDB
R. Chikhale
19:15 -
21:00
DinnerDinnerDinnerDinner
21:00 -
23:00
DTP1DTP 2

*  A stands for activity, D for demonstration, DTP for “Discussion Triggering Presentation”, L for a lecture,
LSB for “leg stretching break”, S for the session, SP for sponsored presentation and T for a tutorial.

** Titles of the lectures and tutorials in the table are, for the sake of clarity, not complete. For the full title of a given lecture or tutorial and the abstract, just follow the link

 

Sunday, 16th April 2023

 15:30 – 17:45     Registration

Registration will take place at the lobby of the Sheraton Dubrovnik Riviera Hotel, Srebreno

                                           chair: Zoran Štefanić

17:45 – 18:30     Opening ceremony (Sheraton Dubrovnik Riviera Hotel, Orlando C lecture hall

18:30 – 19:15      Welcome cocktail, along with A1: Bring your sample (sample collection)

19:15 – 21:00      Dinner

 

 

Monday, 17th April 2023
Hot Topic 1
Morning session                    chair: Aleksandar Višnjevac

08:30 – 09:30    Terese Bergfors: How to Crystallize a Protein: the Basic Concepts

09:30 – 09:45    NT8 by Formulatrix

09:45 – 10:45     Areej Abuhammad: Macromolecular Crystallization Techniques

10:45 – 11:00       Coffee break

11:00 – 12:00       Martin Caffrey: Crystallising Membrane Proteins in Lypidic Systems

12:00 – 12:45      Terese Bergfors: A Protein Crystallization Strategy for Screening and Optimization
                                                             for Structure-Based Drug Design

12:45 – 14:30      Lunch break

 

Afternoon session                 chair: Areej Abuhammad

14:30 – 15:30     Arne Meyer: The Advanced Applications of in-plate Dynamic Light Scattering

15:30 – 15:45     LSB

15:45 – 16:30     Elspeth Garman: Cryo-cooling: Why and How?

16:30 – 17:15      Elspeth Garman: Radiation Damage in Macromolecular Crystallography

17:15 – 17:45      Coffee break

17:45 – 19:15      Elspeth Garman: Cryocooling

19:15 – 21:00      Dinner   

21:00 – 23:00    DTP1 (Students’ Discussion triggering presentations, chaired by Terese Bergfors)           

 

 

Tuesday, 18th April 2023
Hot Topic 2
Morning session                    chair: Martina Vrankić

08:30 – 09:30    Edward Lowe: Fundamentals of Macromolecular Crystallography

09:30 – 09:45    LSB

09:45 – 10:45     Edward Lowe: Basics of X-ray Data Processing

10:45 – 11:15        Coffee break

11:15 – 12:00        Edward Lowe: Data Processing, Scaling,  and Merging

12:00 – 12:45      Eugene Krissinel: Structure Solution in CCP4 Cloud

12:45 – 14:30      Lunch break

 

 Afternoon session                 chair: Alen Bjelopetrović

 14:30 – 15:30     Eugene Krissinel & Maria Fando: Automatic and Fundamental Molecular Replacement

15:30 – 15:45      LSB

15:45 – 16:30      Rob Nicholls: Refinement in CCP4

16:30 – 17:15       Rob Nicholls: CCP4 Cloud Tutorial – Refinement with REFMAC5, Ligand Dictionary Generation with
                                                      AceDRG, and Interactive Model Building & Ligand Fitting with Coot

17:15 – 17:45       Coffee break

17:45 –18:30       Maria Fando: Automatic Model Building, Refinement, and Ligand Fitting

18:30 –19:15        Bring your sample

19:15 –21:00        Dinner

21:00 –23:00       DTP2 (Students’ Discussion triggering presentations, chaired by Areej Abuhammad)

 

 

Wednesday, 19th April 2023
Hot Topic 3
Morning session                    chair: Elspeth Garman

08:30 –09:30     David Armstrong: Introduction to PDB Data, Access, and Validation

09:30 – 09:45    LSB

09:45 – 10:45     David Armstrong: Finding and Interpreting PDB Structures at PDBe

10:45 – 11:15        Coffee break

11:15 – 12:00        David Armstrong: PDBe Knowledge-Base (PDBe-KB): Changing the Context of Structure Data

12:00 – 12:45      David Armstrong: Analysing Large Scale PDB Data Using PDBe-KB

12:45 – 14:30      Lunch break

 

Afternoon session                 chair: Zoran Štefanić

 14:30 – 15:30     David Armstrong: AlphaFold DB – Accessing a wealth of predicted protein structure data

15:30 – 15:45      LSB

15:45 – 16:30      David Armstrong: Programmatic Access of Macromolecular Structure Data

16:30 – 17:15       Rupesh Chikhale: Introduction to the CSD, CSD-Core and CSD-Discovery

17:15 – 17:45       Coffee break

17:45 – 18:30      Rupesh Chikhale: Mining Crystallographic Databases Using CSD-CrossMiner

18:30 –19:15       Rupesh Chikhale: Exploring Interactions in the CSD and PDB Using IsoStar and SuperStar

19:15 –21:00       Dinner

 

 

Thursday, 20th April 2023
Hot Topic 4
Morning session                    chair: David Armstrong

08:30 –09:30    Zoran Štefanić: Visualizing Allosteric Pathways in Oligomeric Enzymes

09:30 – 09:45   LSB

09:45 – 10:45    Zoran Štefanić and Boris Gomaz: Exploring the Structural and Dynamic Data

10:45 – 11:15       Coffee break

11:15 – 12:45       Rupesh Chikhale: How to Perform Ensemble Docking with GOLD?

12:45 – 14:30     Lunch break

 

 Afternoon session                 chair: Jasminka Popović

14:30 – 15:30     Eugene Krissinel: Model Validation and Deposition

15:30 – 15:45     LSB

15:45 – 16:30     Closing Ceremony & Best in Show Awards